How do I delete individual website from database that has multiple?

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I have multiple domains that I self-host. I am doing cleanup after letting domains expire. I have a single mariadb for all of my domains. I want to delete exampleA.com and exampleB.org without disturbing example1.com and example2.org I also want to search my db for any sites I may have missed. I am gunshy with PHPMyAdmin after I saw login attempts and would prefer to use cli. But I can reinstall it and disable forwarding if I have to. So far I have:

removed sites from MainWP

removed sites from vhost.conf and vh-ssl.conf in apache

removed ssl certs

deleted root directories

Apache is successfully running after a reload/restart. All websites are up. Did I miss anything other than db? The only reason I overcame my laziness was certbot renew failures that were crashing apache. Trying to get ahead of another expiration in one day. I hope I don't have to live crappy domains in my db slowing everything down. With the only solution is to backup existing domains and wipe db.

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