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Hi @lesmeralda,
If the taxes are in the order, by default, they will be displayed in the PDF invoices too. You would have to remove your tax rates if you want to display the prices without applying taxes.
However, with the Premium Templates extension, you can display the amount without VAT, even if they were applied to the product prices and the order totals.
Please note that it is a paid plugin, WordPress.org does not allow us to provide support or answering pre-sale question in these forums, therefore, contact us at [email protected], if you have more questions.