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Disable an account is not core feature, so method is always one – to add a marker to user’s metas. Disable User Login plugin uses _is_disable meta key with values 0/1. My plugin additionally creates a meta field with date of disabling and it is compatible now with plugin DUL. So when you disable/enable users via my plugin and DUL is active it will work like you disable/enable in terms of DUL as well (it updates _is_disable meta).
You can easily verify this –
1) disable one of users via my plugin
2) check user list here /wp-admin/users.php – you will disabled status in ‘Disabled’ column
This column is provided by DUL plugin so it means then for DUL this user is disabled as well.