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I have SEOPress and Relevanssi installed, but on the Indexing tab under “Show advanced settings” I’m not seeing the checkbox to exclude noindex posts from the index.
If I enable other SEO plugins like Yoast or Rank Math, the checkbox shows up. And I can see in /compatibility/seopress.php that SEOPress is supported, and I see the checkbox in that code. So SEOPress must have changed something you were relying on to activate the checkbox?